Jack Nagel 277f3d3c30 Stop running "prune" as part of "cleanup"
Rationale: "prune" is slow, does not need to be run as often as
"cleanup", and is potentially destructive to things like empty
directories that Homebrew did not create. Thus we should let users run
`brew prune` only when they wish to, while still being able to use `brew
cleanup`.

Closes Homebrew/homebrew#19863.
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